- *Red* (1993)
- *Black* (1994)
- *White* (1995)
- *The Golden Compass* (1995)
- *The Subtle Knife* (1997)
- *The Amber Spyglass* (2000)
- *Lyra's Oxford* (2003)
- *Once Upon a Time in the North* (2008)
- *The Book of Dust: La Belle Sauvage* (2017)
- *The Book of Dust: The Secret Commonwealth* (2019)
Short stories
- "Dust in Eyes" (1997)
- "Gollum's Tale" (1998)
- "The First Time She Drowned" (2000)
- "The Little Matchstick Girl" (2006)
- "Silvertongue" (2007)
- "I Was a Rat!" (2007)
- "The Story of the Mouse and His Wife" (2010)
- "The Last Banquet" (2011)
Plays
- *His Dark Materials* (2003)
Non-fiction
- *How to Be Good* (2006)
- *The Magic Hour: The Art of Living Through Dark TImes* (2007)
- *The Golden Compass: The Graphic Novel* (2007)
- *The Subtle Knife: The Graphic Novel* (2009)
- *The Amber Spyglass: The Graphic Novel* (2011)
- *Lyra & the Birds* (2012)
- *The Collectors: A Collection of Short Stories* (2013)
- *Tales of the North: Four Stories Inspired by His Dark Materials* (2013)
- *Serpentine* (2018)