* The Young Church in the Old South (1978): Explores the rise of evangelical Christianity in the American South.
* The New Christian Right: A History (1981): Analyzes the emergence and growth of the political movement known as the New Christian Right.
* This Ain't My Mama's Church (1993): Discusses the changing landscape of American evangelicalism and the rise of megachurches.
* The Spirit of the South (1995): Examines the enduring influence of religious faith in the Southern United States.
* White Walls: A Southern Baptist Memoir (2001): Offers a personal account of Quebedeaux's own journey within the Southern Baptist Convention.
* A Time to Heal (2007): Reflects on the challenges facing American Christianity in the wake of the September 11th attacks.
In addition to these books, Quebedeaux has also written numerous articles and essays for publications such as The New York Times, The Washington Post, and Christianity Today. He is a respected voice on contemporary American religion and continues to engage in public discourse on faith and culture.