Theology and Spirituality:
* The Call to Freedom: A New Look at Catholic Morality (1997) - This book offers a critical examination of Catholic moral theology, advocating for a more nuanced approach to moral issues.
* A Spirituality for the 21st Century: Seeking God in the World Today (2001) - This work explores the relevance of spirituality in the modern world and presents a practical guide for spiritual growth.
* The Church of Silence: The Real Story of the Irish Church (2008) - This book delves into the history of the Catholic Church in Ireland, exposing the abuse scandals that have tarnished its image.
* The Wounded Healer: A Spiritual Journey through the Pain of the Irish Church (2010) - Flannery reflects on his own experiences of pain and betrayal within the Church, offering a path to healing and reconciliation.
* The Gift of Doubt: Why Questioning is Essential for Faith (2013) - This book challenges readers to embrace doubt as a natural part of faith, arguing that it can lead to deeper understanding and connection with God.
Social Justice and Political Commentary:
* The Politics of Hope: A Vision for a Just Society (2018) - This book examines the challenges facing contemporary society and presents a vision for a more just and equitable future.
* The Irish Church: A Time for Change (2018) - This book explores the need for reform within the Irish Catholic Church in light of recent scandals and challenges.
Autobiography and Personal Reflections:
* My Journey: A Story of Faith, Doubt and Hope (2021) - This memoir offers a personal account of Flannery's life and spiritual journey, providing insights into his experiences and convictions.
Other Works:
* Theology and Social Justice: A Reader (2000) - An edited collection of essays on the intersection of theology and social justice.
* The Church and the Media: A Critical Assessment (2005) - An examination of the relationship between the Church and the media.
Important Note: Tony Flannery is a controversial figure within the Catholic Church due to his progressive views. His writings have been the subject of debate and criticism, but he remains a respected and influential voice on matters of faith, morality, and social justice.