- 1998. _Paths of Discovery_ (with David C. Page). New York, New York: Franklin Watts.
- 2006. _The Language of God: A Scientist Presents Evidence for Belief_. New York, New York: Free Press.
- 2010. _Belief: Readings on the Reason for Faith_. New York, New York: Basic Books.
- 2013. _The Language of Science and Faith: Straight Answers to Genuine Questions_. Wheaton, Illinois: Tyndale House Publishers, Inc.
- 2017. _The Joy of Discovery: Finding the Gifts in God's Creation_. Carol Stream, Illinois: Tyndale House Publishers, Inc.
- 2019. _On Faith and Science: An Interfaith Dialogue_. Grand Rapids, Michigan: Zondervan.
- 2021. _The Common Thread: Science, Spirit, and the Search for Meaning_. New York: Celadon Books.
Articles
- 1994. "The Human Genome: A Thread of Life." _Science_.
- 1995. "The Human Genome: A Milestone on the Journey to Understanding Life." _Scientific American_.
- 2000. "The Case for National Investment in Cancer Research." _JAMA: The Journal of the American Medical Association_.
- 2001. "Deciphering the Human Genome: A Report on the International Human Genome Sequencing Consortium Project." _Nature_.
- 2002. "The Human Genome Project: A Status Report." _Cell_.
- 2003. "The Human Genome Project: A Global Force for Human Progress." _Science_.
- 2004. "The NIH Roadmap: A Vision for the Future of Biomedical Research." _Nature Medicine_.
- 2005. "The HapMap Project: A Resource for Studying Human Genetic Variation." _Nature_.
- 2006. "The NIH BRAIN Initiative: A New Way to Study the Brain." _Nature Neuroscience_.
- 2007. "The Human Microbiome: A New Frontier in Medical Research." _Cell_.
- 2008. "The Cancer Genome Atlas: A Comprehensive Map of Cancer Genes." _Nature_.
- 2009. "The 1000 Genomes Project: A Catalog of Human Genetic Variation." _Nature_.
- 2010. "The BRAIN Initiative: A New Way to Study the Brain." _Science_.
- 2011. "The Human Microbiome: A New Frontier in Biomedical Research." _Science Translational Medicine_.
- 2012. "The Cancer Genome Atlas: A Comprehensive Map of Cancer Genes." _Science Translational Medicine_.
- 2013. "The 1000 Genomes Project: A Catalog of Human Genetic Variation." _Science Translational Medicine_.
- 2014. "The BRAIN Initiative: A New Way to Study the Brain." _Science Translational Medicine_.
- 2015. "The Human Microbiome: A New Frontier in Biomedical Research." _Science Translational Medicine_.
- 2016. "The Cancer Genome Atlas: A Comprehensive Map of Cancer Genes." _Science Translational Medicine_.
- 2017. "The 1000 Genomes Project: A Catalog of Human Genetic Variation." _Science Translational Medicine_.
- 2018. "The BRAIN Initiative: A New Way to Study the Brain." _Science Translational Medicine_.
- 2019. "The Human Microbiome: A New Frontier in Biomedical Research." _Science Translational Medicine_.
- 2020. "The Cancer Genome Atlas: A Comprehensive Map of Cancer Genes." _Science Translational Medicine_.
- 2021. "The 1000 Genomes Project: A Catalog of Human Genetic Variation." _Science Translational Medicine_.