* The End of Mr. Y (2006)
* PopCo (2008)
* The Swarm (2009)
* Our Tragic Universe (2010)
* The Seed Collectors (2012)
* Going Out (2013)
* Monkeys with Typewriters (2014)
* The Loop (2016)
* Oligarchy (2018)
* Flux (2021)
Short stories:
* The Complete Adventures of Blink & Chunk: Time-Traveling Zombie Detectives (2011)
* The Dark Lord of Derkholm: And Other Stories (2013)
* Futures (2017)
Non-fiction:
* Monkeys with Typewriters: Chronicles of a Curious Mind (2014)
* The Situation (2017)
* The Gospel of Us (2019)