Natural History and Botany:
* Flora Carniolica: This was his most important work, a comprehensive catalog of plants found in Carniola (a region in present-day Slovenia), published in 1760. It was an important contribution to the study of botany in the region and established Scopoli as a leading figure in the field.
* Entomologia Carniolica: Published in 1763, this work described insects found in Carniola. It included detailed illustrations and classifications, making it a significant contribution to the field of entomology.
* Deliciae Florae et Faunae Insubriae: Published in 1786-1788, this work described plants and animals found in the Insubria region of Northern Italy.
* Annus I. Historico-Naturalis: A collection of essays on various natural history topics, published in 1769.
Other Works:
* Introductio ad Historiam Naturalem: This was a textbook on natural history, published in 1777, which explored various aspects of the natural world.
* Antropologia: A work on human anatomy and physiology, published in 1777.
* De Hydroargyro: A treatise on mercury poisoning, published in 1769.
Scopoli's works were widely read and translated into other languages. He is considered one of the most important naturalists of the 18th century, and his work continues to be studied by scientists today. He was also one of the first to use the binomial system of nomenclature for plants, which is still used today.